Add SPInfer annotation and prepared Cellpose data

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README.md

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 ---
-license: unknown
+license: cc-by-4.0
+task_categories:
+  - image-segmentation
+  - image-to-text
+tags:
+  - immunofluorescence
+  - spatial-transcriptomics
+  - spatial-proteomics
+  - alzheimers-disease
+  - cell-segmentation
+pretty_name: SPInfer ROSMAP
 ---
+
+# SPInfer ROSMAP Data
+
+This repository is prepared to host the SPInfer ROSMAP data release.
+
+## Contents
+
+- `raw_annotations/`: original annotated IF image folders and ROI annotation zip files from the local annotation resource.
+- `cellpose_prepared/`: prepared Cellpose-style train/validation/test image and mask folders.
+- `metadata/`: donor split file and release metadata.
+- `manifest.tsv`: file sizes and SHA256 checksums.
+
+Clinical/pathology tables are not included in this public staging bundle.
+
+## Important
+
+Confirm ROSMAP and institutional data-use permissions before making this repository public. If needed, keep the Hugging Face repository gated.
+
+## Package
+
+Use with the SPInfer package:
+
+```bash
+spinfer doctor --config configs/paths.yaml
+spinfer prepare-cellpose --config configs/paths.yaml
+spinfer infer --config configs/paths.yaml --finetuned-model allgt_cpsam
+```
+
+## Source
+
+Local staging was prepared for `liangyou03/SPInfer-ROSMAP`.
+
+## Citation
+
+Please cite the SPInfer manuscript and software release when using this dataset.