Replace dataset with one-level categorized brain_data release

00header.txt

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README.md

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+---
+license: cc-by-4.0
+task_categories:
+  - image-segmentation
+tags:
+  - immunofluorescence
+  - cell-segmentation
+  - brain
+pretty_name: SPInfer ROSMAP
+---
+
+# SPInfer Brain IF Data
+
+This repository contains the compact public SPInfer brain immunofluorescence annotation dataset.
+
+## Layout
+
+```text
+dapi/             DAPI channel images: <stem>.tiff
+marker/           matched marker channel images: <stem>_marker.tiff
+cellbodies/       manual cell-body instance annotations: <stem>_cellbodies.npy
+dapimultimask/    manual DAPI/nucleus instance annotations for the annotated subset
+```
+
+Root files:
+
+```text
+README.md
+manifest.tsv
+dataset_metadata.json
+00header.txt
+.gitattributes
+```
+
+Files pair by stem. For example:
+
+```text
+dapi/gfap_5789.tiff
+marker/gfap_5789_marker.tiff
+cellbodies/gfap_5789_cellbodies.npy
+dapimultimask/gfap_5789_dapimultimask.npy
+```
+
+Clinical/pathology tables are not included.
+
+## File Counts
+
+- 120 DAPI images
+- 120 marker images
+- 120 cell-body annotations
+- 30 DAPI/nucleus multi-mask annotations
+
+## Package
+
+Use with the SPInfer package:
+
+```bash
+spinfer doctor --config configs/paths.yaml
+spinfer prepare-cellpose --config configs/paths.yaml
+```
+
+## Source
+
+Local staging was prepared for `liangyou03/SPInfer-ROSMAP`.
+
+## Citation
+
+Please cite the SPInfer manuscript and software release when using this dataset.

cellbodies/gfap_3527_cellbodies.npy

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